PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN44234.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 338aa    MW: 37391.2 Da    PI: 5.2476
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN44234.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.7e-13105156155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 ++++h  +Er+RR+++N+ +  Lr+l+P     + k+ + a+i   +v+YI++Lq
  KHN44234.1 105 QKMSHITVERNRRKQMNEHLTVLRSLMPCF---YVKRGDQASIIGGVVDYISELQ 156
                 6899*************************9...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.35E-14102160No hitNo description
SuperFamilySSF474591.96E-17103178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.989104155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-13104160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-10105156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-10110161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MDDSLCDIFD DKEFGSEHFG GDDLFAILES LESDFTDFPP PINEEAVVAA VSKDNNEDVS  60
RLVSQKSTSS SAPLDSETEL ETSSKTKRQK LTPTTPEEAN PDGQQKMSHI TVERNRRKQM  120
NEHLTVLRSL MPCFYVKRGD QASIIGGVVD YISELQQVLQ ALEAKKQRKV YSEVLSPRLV  180
SSPRPSPLSP RKPPLSPRLN LPISPRTPQP GSPYRPRLQA QQGYNNIISP TMSNVSLDPS  240
PTSSANSSIN DNINELVANS KSPTADVEVK FSGPHVLLKT VSQRIPGQAM KIITALEDLA  300
LEIVHVNINC AADDTMLNSF TIKVHSYFIY FLILPPFN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003523389.10.0PREDICTED: transcription factor SPEECHLESS-like
SwissprotQ700C72e-96SPCH_ARATH; Transcription factor SPEECHLESS
TrEMBLA0A0B2SJ230.0A0A0B2SJ23_GLYSO; Transcription factor SPEECHLESS
STRINGGLYMA04G41710.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36863463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.13e-84bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]